131. Deußner-Helfmann, N. S., Auer, A., Strauss, M. T., Malkusch, S., Dietz, M. S., Barth, H.-D., Jungmann, R. & Heilemann, M. (2018) Correlative single-molecule FRET and DNA-PAINT imaging. Nano lett. 18 (7), 4626-4630.

130. Gao, Y., Spahn, C., Heilemann, M# & Kenney, L. J. (2018). The pearling transition provides evidence of force-driven endosomal tubulation during Salmonella infection. mBio. 9 (3): e01083-18.

129. Oppelt, A., Kaschek, D., Huppelschoten, S., Sison-Young, R., Zhang, F., Buck-Wiese, M., Herrmann, F., Malkusch, S., Krüger, C. L., Meub, M., Merkt, B., Zimmermann, L., Schofield, A., Jones, R. P, Malik, H., Schilling, M., Heilemann, M., van de Water, B., Goldring, C. E., Park, B. K.,Timmer, T. & Klingmüller, U. (2018). Model-based identification of TNFα-induced IKKβ- and IκBα-mediated regulation of NFκB signal transduction as a tool to quantify the impact of drug-induced liver injury compounds. NPJ Syst Biol Appl. 4, 23.

128. Venkataramani, V., Kardorff, M., Herrmannsdörfer, F., Wieneke, R., Klein, A., Tampé, R., Heilemann, M.# & Kuner, T. (2018). Enhanced labeling density and whole-cell 3D dSTORM imaging by repetitive labeling of target proteins. Sci Rep. 8 (1), 5507. 

127. Harwardt, M.-L. I. E., Dietz, M. S., Heilemann, M.# & Wohland, T. (2018). SPT and imaging FCS provide complementary information on the dynamics of plasma membrane molecules. Biophys J. 114 (10), 2432-2443.

126. Gatterdam, K., Joest, E. F., Dietz, M. S., Heilemann, M. & Tampé, R. (2018) Super-chelators for advanced protein labeling in living cells. Angew Chemie. 57 (20), 5620-5625.

125. Venkataramani, V., Kardorff, M., Herrmannsdörfer, F., Wieneke, R., Klein, A., Tampé, R., Heilemann, M.# & Kuner, T. (2018). Enhanced labeling density and whole-cell 3D dSTORM imaging by repetitive labeling of target proteins. Sci Rep. 8 (1), 5507.

124. Poppelreuther, M., Sander, S., Minden, F., Dietz, M. S., Exner, T., Du, C.; Zhang, I., Ehehalt, F., Knüppel, L., Domschke, S., Badenhop, A., Staudacher, S., Ehehalt, R., Stremmel, W., Thiele, C., Heilemann, M. & Füllekrug, J. (2018) The metabolic capacity of lipid droplet localized acyl-CoA synthetase 3 is not sufficient to support local triglyceride synthesis independent of the endoplasmic reticulum in A431 cells. BBA Mol. Cell Biol Lipids. 1863, 614-624.


122. Krüger, C. L., Zeuner, M.-T., Cottrell, G. S., Widera, D. & Heilemann, M. (2017) Quantitative single-molecule imaging of TLR4 reveals ligand-specific receptor dimerization. Sci Signal. 10 (503), eaan1308.

121.  Spahn, C., Glaesmann, M., Gao, Y., Foo, Y. H., Lampe, M., Kenney, L. J. & Heilemann, M. (2017) Sequential super-resolution imaging of bacterial regulatory proteins, the nucleoid and the cell membrane in single, fixed E. coli cells. Methods Mol Biol. 1624, 269-289.

120.  Stark, T., Lieblein, T., Pohland, M., Kalden, E., Freund, P., Zangl, R., Grewal, R., Heilemann, M., Eckert, G.P., Morgner, N. & Göbel, M.W. (2017) Peptidomimetics that inhibit and partially reverse the aggregation of Aβ1-42. Biochemistry. 56 (36), 4840–4849.

119.  Harwardt, M.-L. I. E., Young, P., Bleymüller, W. M., Meyer, T., Karathanasis, C., Niemann, H. H., Heilemann, M. & Dietz, M. S. (2017) Membrane dynamics of resting and InlB-bound MET receptor tyrosine kinase studied by single-molecule tracking. FEBS Open Bio. 7 (9) 1422-1440.


117.  Polajnar, M., Dietz, M. S., Heilemann, M. & Behrends, C. (2017) Expanding the host cell ubiquitylation machinery targeting cytosolic Salmonella. EMBO Rep. 18 (11), 1871 - 2078.

116.  Grumati, P., Morozzi, G, Hölper, S., Mari, M., Harwardt, M.-L., Yan, R., Müller, S., Reggiori, F., Heilemann, M. & Dikic, I. (2017) Full length RTN3 regulates turnover of tubular endoplasmic reticulum via selective autophagy. Elife. 6:e25555.

115.  van Wijk, S., Fricke, F., Herhaus, L., Gupta, J., Hötte, K., Pampaloni, F., Grumati, P., Kaulich, M., Sou, Y., Komatsu, M., Greten, F., Simone, F., Heilemann, M. & Dikic, I. (2017) Linear ubiquitination of cytosolic Salmonella Typhimurium activates NF-κB and restricts bacterial proliferation. Nat Microbiol. 2, 17066.

114.  Sauer, M. & Heilemann, M. (2017) Single-molecule localization microscopy in eukaryotes. Chem Rev. 117 (11), 7478-7509.

113.  Karathanasis, C., Fricke, F., Hummer, G. & Heilemann, M. (2017) Molecule counts in localization microscopy with organic fluorophores. ChemPhysChem. 18 (8), 942-948.

112.  Warhaut, S., Mertinkus, K. R., Höllthaler, P., Fürtig, B., Heilemann, M., Hengesbach, M. & Schwalbe, H. (2017) Ligand-modulated folding of the full-length adenine riboswitch probed by NMR and single-molecule FRET spectroscopy. Nucleic Acids Res. 45 (9), 5512-5522.

111.  Krüger, C., Fricke, F., Karathanasis, C., Dietz, M. S., Malkusch, S., Hummer, G. & Heilemann, M. (2017) Molecular counting of membrane receptor subunits with single-molecule localization microscopy. Proc SPIE. 10071, 100710K.

110.  Herrmannsdörfer, F., Flottmann, B., Nanguneri, S., Venkataramani, V., Horstmann, H., Kuner, T. & Heilemann, M. (2017) 3D dSTORM imaging of fixed brain tissue. Methods Mol Biol. 1538, 169-184.

109.  Fricke, F., Beaudouin, J., Malkusch, S., Eils, R. & Heilemann, M. (2017) Quantitative single-molecule localization microscopy (qSMLM) of membrane proteins based on kinetic analysis of fluorophore blinking cycles. In: Erfle H. (eds) Super-Resolution Microscopy. Methods in Molecular Biology. 1663. Humana Press, New York, NY.



108.  Diekmann, R., Wolfson, D. L., Spahn, C., Heilemann, M., Schüttpelz, M. & Huser, T. (2016) Nanoscopy of bacterial cells immobilized by holographic optical tweezers. Nat Commun. 7, 13711.

107.  Spahn, C., Herrmannsdörfer, F., Kuner, T. & Heilemann, M. (2016) Cluster analysis through temporal subsampling. Nat Methods. 13 (12), 963–964.

106.  Hummer, G., Fricke, F. & Heilemann, M. (2016) Model-independent counting of molecules in single-molecule localization microscopy. Mol Biol Cell. 27 (22), 3637-3644.

105.  Zeuner, M.-T., Krüger, C. L., Volk, K., Bieback, K., Cottrell, G. S., Heilemann, M. & Widera, D. (2016) Biased signalling is an essential feature of TLR4 in glioma cells. BBA Mol Cell Res. 1863 (12), 3084-3095.

104.  Malkusch, S. & Heilemann, M. (2016) Extracting quantitative information from single-molecule super-resolution imaging data with LAMA – LocAlization Microscopy Analyzer. Sci Rep. 6, 34486.

103.  Hanne, J., Zila, V., Heilemann, M., Müller, B. & Kräusslich, H.-G. (2016) Super-resolved insights into human immunodeficiency virus biology. FEBS Lett. 590 (13), 1858-1876.

102.  Widera, D., Klenke, C., Nair, D., Heidbreder, M., Sibarita, J. B., Choquet, D., Kaltschmidt, B., Heilemann, M. & Kaltschmidt, C. (2016) Single-molecular localization microscopy reveals an influence of glutamate on the lateral dynamics of NF-kB in neurites of living hippocampal neurons. Neurophotonics. 3 (4), 041804.

101.  Venkataramani, V., Herrmannsdörfer, F., Heilemann, M. & Kuner, T. (2016) SuReSim - Simulating localization microscopy experiments from ground truth models. Nat Methods. 13, 319-321.

100.  Zessin, P., Sporbert, A. & Heilemann, M. (2016) PCNA shows two modes of mobility with a constant ratio throughout S-phase in replicating mammalian cells. Sci Rep. 6, 18779.

99.    Kollmannsperger, A., Sharei, A., Raulf, A., Heilemann, M., Langer, R., Jensen, K. F., Wieneke, R. & Tampé, R. (2016) High-content live-cell protein labeling with nanometer precision by cell squeezing. Nat Commun. 7, 10372.



98.    Friedrich, F., Klehs, K., Fichte, M. A. H., Junek, S., Heilemann, M.  & Heckel, A. (2015) A two-photon activatable amino acid linker for the induction of fluorescence. Chem Comm. 51 (84), 15382-15385.

97.    Fricke, F., Beaudouin, J., Eils, R. & Heilemann, M. (2015) One, two or three? Probing the stoichiometry of membrane proteins by single-molecule localization microscopy. Sci Rep. 5, 14072.

96.    Devraj, K., Poznanovic, S., Spahn, C., Schwall, G., Harter, P., Mittelbronn, M., Antoniello, K., Paganetti, P., Muhs, A., Heilemann, M., Hawkins, R. A., Schrattenholz, A. & Liebner, S. (2015) BACE-1 is expressed in the blood-brain barrier endothelium and is upregulated in a murine model of Alzheimer's disease. J Cereb Blood Flow Metab. 36 (7), 1281-1294.

95.    Finan, K., Raulf, A. & Heilemann, M. (2015) A set of homo-oligomeric standards allows accurate protein counting. Angew Chemie. 54 (41), 12049-12052.

94.    Foo, Y. H., Spahn, C., Zhang, H., Heilemann, M.  & Kenney, L. J. (2015) Single cell super-resolution imaging of E. coli OmpR during environmental stress. Integr. Biol. 7, 1297-1308.

93.    Volz, Y., Koschut, D., Matzke, A., Dietz, M. S., Karathanasis, C., Richert, L., Wagner, M. G., Mely, Y., Heilemann, M., Niemann, H. H. & Orian-Rousseau, V. (2015) Direct binding of hepatocyte growth factor and vascular endothelial growth factor to CD44v6. Bioscience Rep. 35 (4), e00236.

92.    Wieneke, R., Raulf, A., Kollmannsperger, A., Heilemann, M.  & Tampé, R. (2015) SLAP: Small labeling pair for single-molecule super-resolution imaging. Angew Chemie. 127 (35), 10354-10357.

91.    Seybold, C., Elserafy, M., Rüthnick, D., Ozboyaci, M., Neuner, A., Flottmann, B., Heilemann, M., Wade, R. C. & Schiebel, E. (2015) Kar1 binding to Sfi1 C-terminal regions anchors the SPB bridge to the nuclear envelope. J Cell Biol. 209 (6), 843-861.

90.    Palayret, M., Armes, H., Basu, S., Watson, A. T., Herbert, A., Lando, D., Etheridge, T. J., Endesfelder, U., Heilemann, M., Laue, E., Carr, A. M., Klenerman, D. & Lee, S. F. (2015) Virtual light-sheet imaging enables optical sectioning in super-resolution microcsopy. PLOS ONE. 10 (4), e0125438.

89.    Fricke, F., Dietz, M. S. Heilemann, M. (2015) Single-molecule methods to study membrane receptor oligomerization. ChemPhysChem. 16 (4), 713-721.

88.    Spahn, C., Cella-Zannacchi, F., Endesfelder, U. & Heilemann, M. (2015) Correlative super-resolution imaging of RNA polymerase distribution and dynamics, bacterial membrane and chromosomal structure in Escherichia coli. Methods Appl Fluoresc. 3 (1), 014005.



87.    Nandi, C.K., Barth, H.-D., Brutschy, B. (2014) A new liquid droplet laser desorption source combined with supersonic jet expansion: Application to phenol and its water clusters. Z Phys Chem. 228, 449-457.

86.    Endesfelder, U. (2014) Advances in correlative single-molecule localization microscopy and electron microscopy. NanoBioImaging. 1, 29–37.

85.    Raulf, A., Spahn, C., Zessin, P. J. M., Finan K., Bernhardt S., Heckel A. & Heilemann, M. (2014) Click chemistry facilitates direct labeling and super-resolution imaging of nucleic acids and proteins. RSC Adv. 4 (57), 30462-30466.

84.    Perkovic, M., Kunz, M., Endesfelder, U., Bunse, S., Wigge, C., Yu, Z., Hodirnau, V., Scheffer, M.P., Seybert, A., Malkusch, S., Schuman, E.M., Heilemann, M. & Frangakis, A.M. (2014) Correlative light- and electron microscopy with chemical tags. J Struct Biol. 186 (2), 205-213.

83.    Endesfelder, U. & Heilemann, M. (2014) Art and artifacts in single-molecule localization microscopy: beyond attractive images. Nat Methods. 11 (3), 235-238.

82.    Fricke, F., Malkusch, S., Wangorsch, G., Greiner, J. F., Kaltschmidt, B., Kaltschmidt, C., Widera, D., Dandekar, T. & Heilemann, M. (2014) Quantitative single-molecule localization microscopy combined with rule-based modeling reveals ligand-induced TNF-R1 reorganization towards higher order oligomers. Histochem Cell Biol. 142 (1), 91-101.

81.    Diez, L. T., Bönsch, C., Malkusch, S., Truan, Z., Munteanu, M., Heilemann, M., Hartley, O., Endesfelder, U. & Fürstenberg, A. (2014) Coordinate-based co-localization mediated analysis of arrestin clustering upon stimulation of the C-C chemokine receptor 5 with RANTES analogues. Histochem Cell Biol. 142 (1), 69-77.

80.    Gunkel, M., Flottmann, B., Heilemann, M., Reymann, J. & Erfle, H. (2014) Integrated and correlative high-throughput and super-resolution microsgopy. Histochem Cell Biol. 141 (6), 597-603.

79.    Endesfelder, U., Malkusch, S., Fricke, F. & Heilemann, M. (2014) A simple method to estimate the average localization precision of a single-molecule localization microscopy experiment. Histochem Cell Biol. 141 (6), 629-638.

78.    Nanguneri, S., Flottmann, B., Herrmannsdörfer, F., Kuner, T. & Heilemann, M. (2014) Single-molecule super-resolution imaging by tryptophan-quenching-induced photoswitching of phalloidin-fluorophore-conjugates. J Microsc Res Tech. 77 (7), 510-516.

77.    Spahn, C., Endesfelder, U. & Heilemann, M. (2014) Super-resolution imaging of Escherichia coli chromosomes reveals asymmetric replication and segregation. J Struct Biol. 185 (3), 243-249.

76.    Klehs, K., Spahn, C., Endesfelder, U., Lee, S. L., Fürstenberg, A. & Heilemann, M. (2014) Increasing the brightness of carbocyanine fluorophores. ChemPhysChem. 15 (4), 637-641.

75.    Dietz, M. S., Fricke, F., Krüger, C., Niemann, H. H. & Heilemann, M. (2014) Receptor-ligand interactions: binding affinities studied with single-molecule and super-resolution microscopy on intact cells. ChemPhysChem. 15 (4), 671-676.



74.     Sroka, R., Pongratz, T., Siegrist, K., Burgmeier, C., Barth, H.D., Schmedt, C.G. (2013) Endovenous laser application strategies to improve endoluminal energy application. Phlebologie. 42 (3), 121-129.

73.     Flottmann, B., Gunkel, M., Lisaukas, T., Heilemann, M., Starkuviene, V., Reymann, J. & Erfle, H. (2013) Correlative light microscopy for high-content screening. BioTechniques. 55 (5), 243–252.

72.     Truan, Z., Börsch, C., Malkusch, S., Endesfelder, U., Munteanu, M., Hartley, O., Heilemann, M. & A. Fürstenberg (2013) Quantitative morphological analysis of arrestin2 clustering upon G protein-coupled receptor stimulation by super-resolution microscopy. J Struct Biol. 184 (2), 329-334.

 71.    Zessin, P., Krüger, C., Malkusch, S., Endesfelder, U. & Heilemann, M. (2013) A non-linear drift-correction and channel-alignment method for localization microscopy techniques using uniform 3D distributions of fiducial markers. Opt Nanoscopy. 2, 4.

 70.    Fürstenberg, A. & Heilemann, M. (2013) Single-molecule localization microscopy – near-molecular spatial resolution in light microscopy with photoswitchable fluorophores. PhysChemChemPhys. 15 (36), 14919-14930.

69.     Müller, B. & Heilemann, M. (2013) Shedding new light on viruses: super-resolution microscopy for studying human immunodeficiency virus. Trends Microbiol. 21 (10), 522-533.

68.     Endesfelder, U., Finan, K., Holden, S. J., Cook, P. R., Kapanidis, A. K. & Heilemann, M. (2013) Nanoscale organization of RNA polymerase in E. coli. Biophys J. 105 (1), 172-181.

67.     Dietz, M. S., Haße, D., Ferraris, D. M., Göhler, A., Niemann, H. H. & Heilemann, M. (2013) Single-molecule photobleaching reveals MET receptor dimerization upon ligand binding in intact cells. BMC Biophys. 6(1), 6.

66.     Sporbert, A., Cseresnyes, Z., Heidbreder, M., Domaing, P., Hauser, S., Kaltschmidt, B., Kaltschmidt, C., Heilemann, M. & Widera, D. (2013) Simple method for sub-diffraction resolution imaging of cellular structures on standard confocal microscopes by three-photon absorption of quantum dots. PLoS ONE. 8 (5), e64023.

65.     Kechkar, A., Nair, D., Heilemann, M., Choquet, D. & Sibarita, J. B. (2013) Real-time analysis and visualization for single-molecule based super-resolution microscopy. PLoS ONE. 8 (4), e62918.

64.     Muranyi, W., Malkusch, S., Müller, B., Heilemann, M. & Kräusslich, H.-G. (2013) Super-resolution microscopy reveals specific recruitment of HIV-1 envelope proteins to viral assembly sites dependent on the envelope C-terminal tail. PLOS Pathog. 9 (2), e1003198.

63.     Finan, K., Flottmann, B. & Heilemann, M. (2013) Photoswitchable fluorophores for single-molecule loclization microscopy. Methods Mol Biol. 950, 131-151.

62.     Malkusch, S., Muranyi, W., Müller, B., Kräusslich, H.-G. & Heilemann, M. (2012) Single-molecule, coordinate-based analysis of the morphology of HIV assembly sites with near-molecular spatial resolution. Histochem Cell Biol. 139 (1), 173-179.



61.     Sibarita, J. B. & Heilemann, M. (2012) Targeting, resolving and quantifying cellular structures by single-molecule localization microscopy. EMBO Rep. 13 (12), 1043-1045.

60.     Dutta, S., Flottmann, B., Heilemann, M. & Mokhir, A. (2012) Hybridization and reaction-based, fluorogenic nucleic acid probes. Chem Commun. 48 (77), 9664-9666.

59.     Neugart, F., Widera, D., Kaltschmidt, B., Kaltschmidt, C. & Heilemann, M. (2012) TNF receptor membrane dynamics studied with fluorescence microscopy and spectroscopy. In: Fluorescent Methods to Study Biological Membranes. Springer Series on Fluorescence, Springer. 439–457.

58.     Heidbreder, M., Zander, C., Malkusch, S., Widera, D., Kaltschmidt, B., Kaltschmidt, C., Nair, D., Choquet, D., Sibarita, J.-B. & Heilemann, M. (2012) TNFalpha influences the lateral dynamics of TNF receptor I in living cells. BBA Mol Cell Res. 1823 (10), 1984-1989.

57.     Lando, D., Endesfelder, U., Berger, H., Dunne, P. D., McColl, J., Klenerman, D., Carr, A. M., Sauer, M., Allshire, R., Heilemann, M. & Laue, E. D. (2012) Quantitative single molecule microscopy reveals that CENP-Acnp1 deposition occurs during G2 in fission yeast. Open Biol. 2, 120078.

56.     Bar-on, D., Wolter, S., van de Linde, S., Heilemann, M., Nachliel, E., Gutman, M., Sauer, M. & Ashery, U. (2012) Super-resolution imaging reveals the internal architecture of nano-sized syntaxin clusters. J Biol Chem. 287, 27158-27167.

55.     Nangunieri, S., Flottmann, B., Horstmann, H., Heilemann, M. & Kuner, T. (2012) Three-dimensional, tomographic super-resolution fluorescence imaging of serially sectioned thick samples. PloS ONE. 7, e38098.

54.     Brodehl, A., Hedde, P. N., Dieding, M., Fatima, A., Walhorn, V., Gayda, S., Saric, T., Klauke, B., Gummert, J., Anselmetti, D., Heilemann, M., Nienhaus, G. U. & Milting, H. (2012) Molecular insights into filament assembly defects of ARVC-related desmin mutations. J Biol Chem. 287 (19), 16047-16057.

53.     Lampe, A., Haucke, V., Heilemann, M. & Schmoranzer, J. (2012) Multi-color direct STORM with red emitting carbocyanines. Biol Cell. 104 (4), 229-237.

52.     van de Linde, S., Heilemann, M. & Sauer, M. (2012) Live-cell super-resolution imaging with synthetic fluorophors. Annu Rev Phys Chem. 63, 519-540.

51.     Löschberger, A., van de Linde, S., Dabauvalle, M.-C., Rieger, B., Heilemann, M., Krohne, G. & Sauer, M. (2012) Super-resolution imaging reveals eightfold symmetry of gp210 proteins around the nuclear pore complex and resolves the central channel with nanometer resolution. J Cell Sci. 125, 570-575.

50.     Heilemann, M. (2012) Elucidating cellular structures – Superresolution microscopy. Comprehensive Biophysics, Elsevier.

49.     Zessin, P. J. M., Finan, K. & Heilemann, M. (2012) Super-resolution fluorescence imaging of chromosomal DNA using click chemistry. J Struct Biol. 177 (2), 344-348.

48.     Dertinger, T.., Colyer, R., Vogel, R., Heilemann, M., Sauer, M., Enderlein, J. & Weiss, S. (2012) Super-resolution optical fluctuation imaging (SOFI). Adv Exp Med Biol. 733, 17-21.

47.     Malkusch, S., Endesfelder, U., Mondry, J., Gelléri, Martón, Verveer, P. J. & Heilemann, M. (2012) Coordinate-based colocalization analysis of single-molecule localization microscopy data. Histochem Cell Biol. 137 (1), 1-10.



46.     Eckhardt, M., Anders, M., Muranyi, W., Heilemann, M., Krijnse-Locker, J. & Müller, B. (2011) A SNAP-tagged derivative of HIV-1 – a versatile tool to study virus-cell interactions. PloS ONE. 6 (7), e22007.

45.     van de Linde, S., Löschberger, A., Klein, T., Heidbreder, M., Wolter, S., Heilemann, M. & Sauer, M. (2011) Direct stochastic optical reconstruction microscopy with standard fluorescent probes. Nat Protocols. 6 (7), 991-1009.

44.     Widera, D., Heimann, P., Zander, C., Imielski, Y., Heidbreder, M., Heilemann, M., Kaltschmidt, C. & Kaltschmidt, B. (2011) Myalinating Schwann cells can be reprogrammed to multipotency by culture. Stem Cells Dev. 20 (12), 2053-2064.

43.     Endesfelder, U., Malkusch, S., Flottmann, B., Mondry, J., Liguzinski, P., Verveer, P. J. & Heilemann, M. (2011) Chemically induced photoswitching of fluorescent probes – a general concept for super-resolution imaging. Molecules. 16, 3106-3118.

42.     Wolter, S., Endesfelder, U., van de Linde, S., Heilemann, M. & Sauer, M. (2011) Measuring localization performance of super-resolution algorithms on very active samples. Opt Express. 19 (8), 7020-7033.

41.     van de Linde, S., Krstic, I., Prisner, T., Doose, S., Heilemann, M. & Sauer, M. (2011) Photoinduced formation of stable dye radicals. Photochem Photobiol Sci. 10 (4), 499-506.



40.     Kottke, T., van de Linde, S., Sauer, M., Kakorin, S. & Heilemann, M. (2010) Identification of the product of photoswitching of an oxazine fluorophore using Fourier transform infrared difference spectroscopy. J Phys Chem Lett. 1 (21), 3156-3159.

39.     Dertinger, T., Heilemann, M., Vogel, R., Sauer, M. & Weiss, S. (2010) Superresolution optical fluctuation imaging with organic dyes. Angew Chemie. 49 (49), 9441-9443.

38.     Zheng, Z., Nottbohm, C. T., Turchanin, A., Muzik, H.,  Beyer, A., Heilemann, M., Sauer, M. & Gölzhäuser, M. (2010) Janus nanomembranes: bilaterally functionalized freestanding 1 nm thick carbon membranes. Angew Chemie. 49 (45), 8493-8497.

37.     Wombacher, R., Heidbreder, M., van de Linde, S., Sheetz, M. P., Heilemann, M., Cornish, V. W. & Sauer, M. (2010) Live-cell super-resolution imaging of core histones with trimethoprim conjugates. Nat Methods. 7 (9), 717-719.

36.     Uphoff, S., Holden, S., Le Reste, L., van de Linde, S., Heilemann, M. & Kapanidis, A. N. (2010) Monitoring multiple distances within a single molecule using switchable FRET. Nat Methods. 7 (10), 831-836.

35.     Heidbreder, M., Endesfelder, U., van de Linde, S., Hennig, S., Widera, D., Kaltschmidt, B., Kaltschmidt C. & Heilemann, M. (2010) Subdiffraction fluorescence microscopy of biomolecular structure and distributions with Quantum Dot Triexciton Imaging (QDTI). BBA Mol Cell Res. 1803 (10), 1224-1229.

34.     Hohlbein, J., Gryte, K., Heilemann, M. & Kapanidis, A. N. (2010) Surfing on a new wave of single-molecule fluorescence methods. Phys Biol. 7, 031001.

33.     Heilemann, M. (2010) Fluorescence microscopy beyond the diffraction limit. J Biotechnol. 149 (4), 243-251.

32.     van de Linde, S., Wolter, S., Heilemann, M. & Sauer, M. (2010) The effect of photoswitching kinetics and labeling densities on super-resolution fluorescence imaging. J Biotechnol. 149 (4), 260-266.

31.     Nottbohm, C. T., Sopher, R., Heilemann, M., Sauer, M. & Golzhäuser A. (2010) Fluorescently labeled 1 nm thin carbon nanomembranes. J Biotechnol. 149 (4), 267-271.

30.     Endesfelder, U., van de Linde, S., Wolter, S., Sauer, M & Heilemann, M. (2010) Subdiffraction-resolution fluorescence microscopy of myosin-actin motility. ChemPhysChem. 11 (4), 836-840.

29.     Seefeldt, B, Kasper, R., Beining, M., Mattay, J., Arden-Jacob, J., Kemnitzer, N., Drexhage, K. H., Heilemann, M. & Sauer, M. (2010) Spiropyrans as molecular optical switches. Photochem Photobiol Sci. 9 (2), 213-220.

28.     Lymperopoulos, K., Crawford, R., Torella, J. P., Heilemann, M., Hwang, L. C., Holden, S. J. and Kapanidis, A. N. (2010) Single-molecule DNA biosensors for protein and ligand detection. Angew Chemie. 49 (7), 1316-1320.

27.     Wolter, S., Schüttpelz, M., Tscherepanow, M., van de Linde, S., Heilemann, M. & Sauer, M. (2010) Real-time computation for subdiffraction-resolution fluorescence images. J Microsc. 237 (1), 12-22.



26.     Heilemann, M., van de Linde, S., Mukherjee, A. & Sauer, M. (2009) Super-resolution imaging with small organic fluorophores. Angew Chemie. 48 (37), 6903-6908.

25.     Heilemann, M. & Sauer, M. (2009) Superhochauflösung: Mikroskopie unterhalb des Beugungslimits mit konventionellen Fluoreszenzfarbstoffen. Labor & more. 04-09, 32-34.

24.     Hennig, S., van de Linde, S., Heilemann, M. & Sauer, M. (2009) Quantum dot triexciton imaging with three-dimensional subdiffraction resolution. Nano Lett. 9 (6), 2466-2470. Highlighted in Nature Materials, 8, 536 (2009).

23.     Heilemann, M. (2009) Light at the end of the tunnel. Angew Chemie. 48 (22), 3908-3910.

22.     Heilemann, M., Hwang, L. C., Lymperopoulos, K. & Kapanidis, A. (2009) Single-molecule FRET-analysis of protein-DNA complexes. Methods Mol Biol. 543, 503-521.

21.     van de Linde, S., Endesfelder, U., Mukherjee, A., Schüttpelz, M., Wiebusch, G., Wolter, S., Heilemann, M. & Sauer, M. (2009) Multicolor photoswitching microscopy for subdiffraction resolution fluorescence imaging. Photochem Photobio Sci. 8, 465-469.

20.     Heilemann, M., Dedecker, P., Hofkens, J. & Sauer, M. (2009) Photoswitches: Key molecules for subdiffraction-resolution fluorescence imaging and molecular quantification. Laser Photon Rev. 3, 180-202.



19.     van de Linde, S., Kasper, R., Heilemann, M. & Sauer, M. (2008) Photoswitching microscopy with standard rluorophores. Appl Phys B. 93, 725-731.

18.     van de Linde, S., Sauer, M. & Heilemann, M. (2008) Subdiffraction-resolution fluorescence imaging of proteins in the mitochondrial inner membrane with photoswitchable fluorophores. J Struct Biol. 164, 250-254.

17.     Heilemann, M., van de Linde, S., Schüttpelz, M., Kasper, R., Seefeldt, B., Mukherjee, A., Tinnefeld, P. & Sauer, M. (2008) Subdiffraction-resolution fluorescence imaging with conventional fluorescent probes. Angew Chemie. 47 (33), 6172-6176.

16.     Goodman, R. P., Heilemann, M., Doose, S., Kapanidis, A. N. & Turberfield, A. J. (2008) Reconfigurable, braced, three-dimensional DNA nanostructures. Nat Nanotechnol. 3 (2), 93-96.

15.     Seefeldt, B., Kasper, R., Seidel, T., Tinnefeld, P., Dietz, K.-J., Heilemann, M. & Sauer, M. (2008) Fluorescent proteins for single-molecule fluorescence applications. J Biophotonics. 1 (1), 74-82.

14.     Vogelsang, J., Kasper, R., Steinhauer, C., Person, B., Heilemann, M., Sauer, M. & Tinnefeld, P. (2008). A reducing and oxidizing system minimizes photobleaching and blinking of fluorescent dyes. Angew Chemie. 47 (29), 5465-5469.



13.     Roth, C. M., Heinlein, P. I., Heilemann, M. & Herten, D. P. (2007) Imaging diffusion in living cells using time-correlated single-photon counting. Anal Chem. 79, 7340-7345.

12.     Doose, S., Heilemann, M., Michalet, X., Weiss, S. & Kapanidis, A. N. (2007) Periodic acceptor excitation spectroscopy of single molecules. Eur Biophys J. 36, 669-674.

11.     Clifford, J. N., Bell, T. D., Tinnefeld, P., Heilemann, M., Melnikov, S. M., Hotta, J., Sliwa, M., Dedecker, P., Sauer, M., Hofkens, J. & Yeow, E. K. (2007) Fluorescence of single molecules in polymer films: sensitivity of blinking to local environment. J Phys Chem B. 111, 6987-6991.



10.      Sanchez-Mosteiro, G., van Dijk, E. M., Hernando, J., Heilemann, M., Tinnefeld, P., Sauer, M., Koberling, F., Patting, M., Wahl, M., Erdmann, R., van Hulst, N. F. & Garcia-Parajo, M. F. (2006) DNA-based molecular wires: multiple emission pathways of individual constructs. J Phys Chem B. 110, 26349-26353.

9.         Heilemann, M., Kasper, R., Tinnefeld, P. & Sauer, M. (2006) Dissecting and reducing the heterogeneity of excited-state energy transport in DNA-based photonic wires. J Am Chem Soc. 128, 16864-16875.



8.         Tinnefeld, P., Heilemann, M. & Sauer, M. (2005) Design of molecular photonic wires based on multistep electronic excitation transfer. ChemPhysChem. 6 (2), 217-222.

7.         Heinlein, T., Biebricher, A., Schlüter, P., Roth, C. M., Herten, D. P., Wolfrum, J., Heilemann, M., Muller, C., Tinnefeld, P. & Sauer, M. (2005) High-resolution colocalization of single molecules within the resolution gap of far-field microscopy. ChemPhysChem. 6 (5), 949-955.

6.         Heilemann, M., Margeat, E., Kasper, R., Sauer, M. & Tinnefeld, P. (2005) Carbocyanine dyes as efficient reversible single-molecule optical switch. J Am Chem Soc. 127 (11), 3801-3806.


2004 and before 

5.         Tinnefeld, P., Buschmann, V., Weston, K. D., Biebricher, A., Herten, D. P., Piestert, O., Heinlein, T., Heilemann, M. & Sauer, M. (2004) How single molecule photophysical studies complement ensemble methods for a better understanding of chromophores and chromophore interactions. Rec Res Dev Phys Chem. 7, 95-125.

 4.         Herten, D. P., Biebricher, A., Heilemann, M., Heinlein, T., Müller, C., Schlüter, P., Tinnefeld, P., Weston, K. D., Sauer, M. & Wolfrum, J. (2004) Optical single molecule techniques for analytical and biological applications. Rec Res Dev Appl Phys. 7, 2-24.

3.         Heilemann, M., Tinnefeld, P., Sanchez Mosteiro, G., Garcia Parajo, M., Van Hulst, N. F. & Sauer, M. (2004) Multistep energy transfer in single molecular photonic wires. J Am Chem Soc. 126, 6514-6515. Highlighted in Science, 304, 5675 (2004).

2.         Devos, I., Womes, M., Heilemann, M., Olivier-Fourcade, J., Jumas, J.-C. & Tirado, J. L. (2004) Lithium insertion mechanism in CoSb3 analysed by 121Sb Moessbauer spectrometry, X-ray absorption spectroscopy and electronic structure calculations. J Mater Chem. 14, 1759-1767.

1.         Heilemann, M., Herten, D. P., Heintzmann, R., Cremer, C., Muller, C., Tinnefeld, P., Weston, K. D., Wolfrum, J. & Sauer, M. (2002) High-resolution colocalization of single dye molecules by fluorescence lifetime imaging microscopy. Anal Chem. 74, 3511-3517.